I'm not sure how much work you want to do, or if the appropriate parts are even available in O scale (I'm sure they are), but why not drill out the various fan housings on the top of the model and replace the grills with etched grills? HO guys do it, mostly for looks and/or sound quality.
Open grill fans will give you extra heat dissipation openings, especially if you include a micro-fan or something to move the air.
Ian Lisakowski
Winnipeg, MB
Great White North