Do you have the model 97 manual?
There are jumpers that can set "autochuff"... that is one of your answers..
The battery leads are for the backup battery.... not to power the system
I think the issue is that the track leads set the speed by dc voltage level, and the output from the RP module is not varying DC level, but PWM, which the Phoenix will interpret as full speed.
There were adapter boards to "convert" pwm to a varying DC.... by the time you do that, buying a different sound card will cause less consternation and expense.
Greg